Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0007203
UniProt IDQ9UMY4
Primary gene name(s)SNX12
Synonym gene name(s)unknown
Protein nameSorting nexin-12
Protein functionMay be involved in several stages of intracellular trafficking. {ECO:0000250}.
Subcellular locationMembrane {ECO:0000305};
Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q9UMY4
Gene Ontology
(Biological Process)
Complete annatation
negative regulation of early endosome to late endosome transport [GO:2000642];
negative regulation of gene expression [GO:0010629];
negative regulation of protein catabolic process [GO:0042177];
negative regulation of protein processing [GO:0010955];
negative regulation of protein transport [GO:0051224];
protein transport [GO:0015031];
regulation of endocytosis [GO:0030100];
vesicle organization [GO:0016050]
Gene Ontology
(Molecular Function)
Complete annatation
enzyme binding [GO:0019899];
phosphatidylinositol binding [GO:0035091]
Gene Ontology
(Cellular Component)
Complete annatation
early endosome [GO:0005769];
extracellular exosome [GO:0070062];
extrinsic component of membrane [GO:0019898]
Protein-protein interaction118974
Phylogenetic treeQ9UMY4
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD30.8772033091382980.007895228388270610.0213485615837845
AZA vs. DISU0.1238562511101610.6262949074967640.960057478314726
AZA vs. IL70.06343898076736610.7439302387132360.999311006273513
AZA vs. SAHA-0.2519476580425470.3057951585985810.677875914811031
DISU vs. CD3-0.7662631432076790.03561795944050420.0822843096714421
DISU vs. IL7-0.06998003377748250.7822213072383770.949970692549628
DISU vs. SAHA-0.3736923284072860.2033028879049210.577128992958197
DMSO vs. AZA0.03135587204443050.853606190011731
DMSO vs. CD3-0.8576145186538810.007789095022673780.0200898447778745
DMSO vs. DISU-0.09458687850752110.6996767058822040.958803444206224
DMSO vs. IL70.03931700523665040.8286612680380930.963051812112721
DMSO vs. SAHA-0.2890830118621010.2240302068527180.569945855414806
HIV vs. Mock in Activation-0.0487186182720730.9375868313767440.999983755607037
HIV vs. Mock in Latency0.06357238514706940.7040505694131980.999834320637052
IL7 vs. CD3-0.8070698350506860.01261916571103890.0360311962042981
SAHA vs. CD3-1.152948046045520.001298590501684020.00448641881255803
SAHA vs. IL7-0.3178702336292490.1952284225624790.426750760108296
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) unknown
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK -0.130377 0.394543
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
0.951 0.911 0.834 0.922 0.912
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

PDB Accession Method Resolution Chain Structure Preview
2CSK NMR - A=27-159.

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
hsa04144 Endocytosis - Homo sapiens (human)