Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0007024
UniProt IDQ9UBV2
Primary gene name(s)SEL1L
Synonym gene name(s)TSA305
Protein nameProtein sel-1 homolog 1
Protein functionPlays a role in the endoplasmic reticulum quality control, ERQC system also called ER-associated degradation, ERAD involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins, PubMed:16186509. Enhances SYVN1 stability. Plays a role in LPL maturation and secretion. Required for normal differentiation of the pancreas epithelium, and for normal exocrine function and survival of pancreatic cells. May play a role in Notch signaling. {ECO:0000250|UniProtKB:Q9Z2G6, ECO:0000269|PubMed:16186509}.
Subcellular locationEndoplasmic reticulum membrane {ECO:0000269|PubMed:16186509};
Single-pass type I membrane protein {ECO:0000269|PubMed:16186509}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q9UBV2
Gene Ontology
(Biological Process)
Complete annatation
endoplasmic reticulum mannose trimming [GO:1904380];
ERAD pathway [GO:0036503];
ER-associated ubiquitin-dependent protein catabolic process [GO:0030433];
Notch signaling pathway [GO:0007219];
protein secretion [GO:0009306];
protein stabilization [GO:0050821];
retrograde protein transport, ER to cytosol [GO:0030970];
triglyceride metabolic process [GO:0006641]
Gene Ontology
(Molecular Function)
Complete annatation
Gene Ontology
(Cellular Component)
Complete annatation
Derlin-1 retrotranslocation complex [GO:0036513];
endoplasmic reticulum membrane [GO:0005789];
endoplasmic reticulum quality control compartment [GO:0044322];
Hrd1p ubiquitin ligase complex [GO:0000836];
integral component of membrane [GO:0016021]
Protein-protein interaction112300
Phylogenetic treeQ9UBV2
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD30.6631035327936140.04442778400270130.0905252886965951
AZA vs. DISU0.3150584380482540.2153536194728370.803182072036389
AZA vs. IL70.06032906444805560.7533539862402670.999311006273513
AZA vs. SAHA0.09842157262069460.6865109533737530.909717060895527
DISU vs. CD3-0.3602749712135110.3305870806139730.463775677354586
DISU vs. IL7-0.2636893639304830.2973093947017370.681767436131531
DISU vs. SAHA-0.2159360046254630.463284053918360.800246874109296
DMSO vs. AZA-0.05046239142964690.7629412940967061
DMSO vs. CD3-0.7242056093371020.0247109770246270.053410454645051
DMSO vs. DISU-0.3671221392743680.1346098506275770.625334218112252
DMSO vs. IL70.1178591154754470.5116488696464440.88780433692056
DMSO vs. SAHA0.1414262740409660.5484848493386820.837763774641054
HIV vs. Mock in Activation0.1868426944582010.7651946602859230.999983755607037
HIV vs. Mock in Latency0.07192103971992480.6624306793155470.999834320637052
IL7 vs. CD3-0.5946878213664990.06622083119998210.137656404451432
SAHA vs. CD3-0.5897842529492620.09607145427772170.168426805021553
SAHA vs. IL70.03400013538576720.8889533874093330.956187928924358
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) unknown
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK -0.15492 0.294559
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
1 0.989 0.968 1.051 0.992
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

not found

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

HIV Partner Interaction Type PubMed
Envelope surface glycoprotein gp160; precursor interacts with 22190034
Envelope transmembrane glycoprotein gp41 interacts with 22190034

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
hsa04141 Protein processing in endoplasmic reticulum - Homo sapiens (human)