Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0003754
UniProt IDP05089
Primary gene name(s)ARG1
Synonym gene name(s)unknown
Protein nameArginase-1
Protein functionunknown
Subcellular locationCytoplasm {ECO:0000269|PubMed:16141327}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: P05089
Gene Ontology
(Biological Process)
Complete annatation
aging [GO:0007568];
arginine catabolic process [GO:0006527];
arginine catabolic process to ornithine [GO:0019547];
cellular response to dexamethasone stimulus [GO:0071549];
cellular response to glucagon stimulus [GO:0071377];
cellular response to hydrogen peroxide [GO:0070301];
cellular response to interleukin-4 [GO:0071353];
cellular response to lipopolysaccharide [GO:0071222];
cellular response to transforming growth factor beta stimulus [GO:0071560];
collagen biosynthetic process [GO:0032964];
liver development [GO:0001889];
lung development [GO:0030324];
mammary gland involution [GO:0060056];
maternal process involved in female pregnancy [GO:0060135];
positive regulation of endothelial cell proliferation [GO:0001938];
protein homotrimerization [GO:0070207];
regulation of L-arginine import [GO:0010963];
response to amine [GO:0014075];
response to amino acid [GO:0043200];
response to axon injury [GO:0048678];
response to cadmium ion [GO:0046686];
response to drug [GO:0042493];
response to herbicide [GO:0009635];
response to manganese ion [GO:0010042];
response to methylmercury [GO:0051597];
response to selenium ion [GO:0010269];
response to vitamin A [GO:0033189];
response to vitamin E [GO:0033197];
response to zinc ion [GO:0010043];
urea cycle [GO:0000050]
Gene Ontology
(Molecular Function)
Complete annatation
Gene Ontology
(Cellular Component)
Complete annatation
Protein-protein interaction106878
Phylogenetic treeP05089
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD3unknownunknownunknown
AZA vs. DISUunknownunknownunknown
AZA vs. IL7unknownunknownunknown
AZA vs. SAHAunknownunknownunknown
DISU vs. CD3unknownunknownunknown
DISU vs. IL7unknownunknownunknown
DISU vs. SAHAunknownunknownunknown
DMSO vs. AZAunknownunknownunknown
DMSO vs. CD3unknownunknownunknown
DMSO vs. DISUunknownunknownunknown
DMSO vs. IL7unknownunknownunknown
DMSO vs. SAHAunknownunknownunknown
HIV vs. Mock in Activationunknownunknownunknown
HIV vs. Mock in Latencyunknownunknownunknown
IL7 vs. CD3unknownunknownunknown
SAHA vs. CD3unknownunknownunknown
SAHA vs. IL7unknownunknownunknown
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) unknown
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
NOTEST 2.69215 1
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
0.799 0.299 7.919 0.645 1.091
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

Drugbank ID Drug Name Drug Status Pharmacological Action Drug Action
DB00129 L-Ornithine approved, nutraceutical unknown unknown
DB01983 2(S)-Amino-6-Boronohexanoic Acid experimental unknown unknown
DB02381 Nor-N-Omega-Hydroxy-L-Arginine experimental unknown unknown
DB02499 Dinor-N(Omega)-Hydroxy-L-Arginine experimental unknown unknown
DB02689 S-{2-[Amino(Dihydroxy)-Lambda~4~-Sulfanyl]Ethyl}-D-Cysteine experimental unknown unknown
DB03144 N-Omega-Hydroxy-L-Arginine experimental unknown unknown
DB03731 S-2-(Boronoethyl)-L-Cysteine experimental unknown unknown
DB03904 Urea approved unknown unknown
DB04197 Descarboxy-nor-N(Omega)-Hydroxy-L-Arginine experimental unknown unknown
DB04530 S,S-(2-Hydroxyethyl)Thiocysteine experimental unknown unknown
DB04585 DEHYDRO-2(S)-AMINO-6-BORONOHEXANOIC ACID experimental unknown unknown
DB04648 S-propylamine-L-cysteine experimental unknown unknown

Protein Secondary Structure       (annotations from PDB)      top

PDB Accession Method Resolution Chain Structure Preview
1WVA X-ray 1.9Å A/B=1-322.
1WVB X-ray 2.3Å A/B=1-322.
2AEB X-ray 1.2Å A/B=1-322.
2PHA X-ray 1.9Å A/B=1-322.
2PHO X-ray 1.9Å A/B=1-322.
2PLL X-ray 1.9Å A/B=1-322.
2ZAV X-ray 1.7Å A/B=1-322.
3DJ8 X-ray 1.5Å A/B=1-322.
3E6K X-ray 2.1Å A/B=1-322.
3E6V X-ray 1.7Å A/B=1-322.
3F80 X-ray 1.6Å A/B=1-322.
3GMZ X-ray 1.4Å A/B=1-322.
3GN0 X-ray 1.7Å A/B=1-322.
3KV2 X-ray 1.5Å A/B=1-322.
3LP4 X-ray 1.9Å A/B=1-322.
3LP7 X-ray 2.0Å A/B=1-322.
3MFV X-ray 1.9Å A/B=1-322.
3MFW X-ray 1.4Å A/B=1-322.
3MJL X-ray 1.9Å A/B=1-322.
3SJT X-ray 1.6Å A/B=1-322.
3SKK X-ray 1.7Å A/B=1-322.
3TF3 X-ray 1.6Å A/B=1-322.
3TH7 X-ray 2.1Å A/B=1-322.
3THE X-ray 1.9Å A/B=1-322.
3THH X-ray 1.8Å A/B=1-322.
3THJ X-ray 1.5Å A/B=1-322.
4FCI X-ray 1.8Å A/B=1-322.
4FCK X-ray 1.9Å A/B=1-322.
4GSM X-ray 1.7Å A/B=1-322.
4GSV X-ray 1.4Å A/B=1-322.
4GSZ X-ray 2.2Å A/B=1-322.
4GWC X-ray 1.9Å A/B=1-322.
4GWD X-ray 1.5Å A/B=1-322.
4HWW X-ray 1.3Å A/B=5-318.
4HXQ X-ray 1.4Å A/B=5-318.
4IE1 X-ray 2.0Å A/B=5-318.

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
hsa00220 Arginine biosynthesis - Homo sapiens (human)
hsa00330 Arginine and proline metabolism - Homo sapiens (human)
hsa01100 Metabolic pathways - Homo sapiens (human)
hsa01230 Biosynthesis of amino acids - Homo sapiens (human)
hsa05146 Amoebiasis - Homo sapiens (human)