Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0002050
UniProt IDO95897
Primary gene name(s)OLFM2
Synonym gene name(s)NOE2
Protein nameNoelin-2
Protein functionInvolved in transforming growth factor beta, TGF-beta-induced smooth muscle differentiation. TGF-beta induces expression and nuclear translocation of OLFM2 where it binds to SRF, causing its dissociation from the transcriptional repressor HEY2/HERP1 and facilitating binding of SRF to target genes, PubMed:25298399. Plays a role in AMPAR complex organization, By similarity. {ECO:0000250|UniProtKB:Q8BM13, ECO:0000269|PubMed:25298399}.
Subcellular locationSecreted {ECO:0000269|PubMed:21228389}. Cell junction, synapse {ECO:0000250|UniProtKB:Q8BM13}. Membrane {ECO:0000250|UniProtKB:Q8BM13}. Nucleus {ECO:0000269|PubMed:25298399}. Cytoplasm {ECO:0000269|PubMed:25298399}. Note=Nuclear localization is induced by TGF-beta. {ECO:0000269|PubMed:25298399}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: O95897
Gene Ontology
(Biological Process)
Complete annatation
locomotory behavior [GO:0007626];
positive regulation of smooth muscle cell differentiation [GO:0051152];
protein secretion [GO:0009306];
visual perception [GO:0007601]
Gene Ontology
(Molecular Function)
Complete annatation
Gene Ontology
(Cellular Component)
Complete annatation
AMPA glutamate receptor complex [GO:0032281];
cell junction [GO:0030054];
cytoplasm [GO:0005737];
extracellular region [GO:0005576];
nucleus [GO:0005634];
synaptic membrane [GO:0097060]
Protein-protein interaction125007
Phylogenetic treeO95897
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD3-1.407850521827320.2079763629050330.314594514422387
AZA vs. DISU-0.9524265327103970.03613182617382050.441601696311484
AZA vs. IL7-0.4270967244033090.03333646671907580.566104966957544
AZA vs. SAHA-2.256681923803450.0003397548267928260.00964987982233104
DISU vs. CD30.4440678257870910.6798925390140410.774597546149018
DISU vs. IL70.5139283909494730.2633424118175090.649310902543171
DISU vs. SAHA-1.301468733778790.1139450011004440.433981579879907
DMSO vs. AZA0.1100545855665260.5303069979329781
DMSO vs. CD31.504274732319540.173619660992520.267249831794965
DMSO vs. DISU1.059499758744590.01610714401011780.265283781674837
DMSO vs. IL7-0.5298958221422090.004811203504301530.14040039803309
DMSO vs. SAHA-2.370435675605280.0001456657205669560.00462562187649778
HIV vs. Mock in Activation-0.2579376704727480.8976424948596770.999983755607037
HIV vs. Mock in Latency-0.1206686355159050.4799025644020040.999834320637052
IL7 vs. CD30.9851426872594140.3893767404722890.526232906763993
SAHA vs. CD3-0.8744766464849790.582742898449290.682940779192068
SAHA vs. IL7-1.831721073809660.002960174100773540.0262943192053386
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change 2.430836713
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) TRUE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK -0.860934 0.000305467
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
unknown unknown unknown unknown unknown
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

not found

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
not found