Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0002023
UniProt IDQ8WUM0
Primary gene name(s)NUP133
Synonym gene name(s)unknown
Protein nameNuclear pore complex protein Nup133
Protein functionInvolved in poly(A+ RNA transport. {ECO:0000269|PubMed:11684705}.
Subcellular locationNucleus, nuclear pore complex {ECO:0000269|PubMed:11564755, ECO:0000269|PubMed:11684705}. Chromosome, centromere, kinetochore {ECO:0000269|PubMed:11564755}. Note=Located on both the cytoplasmic and nuclear sides of the nuclear pore, PubMed:11564755. During mitosis, localizes to the kinetochores, PubMed:11564755. {ECO:0000269|PubMed:11564755, ECO:0000269|PubMed:11684705}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q8WUM0
Gene Ontology
(Biological Process)
Complete annatation
chromatin organization [GO:0006325];
gene silencing by RNA [GO:0031047];
intracellular transport of virus [GO:0075733];
mitotic nuclear envelope disassembly [GO:0007077];
mRNA export from nucleus [GO:0006406];
neural tube development [GO:0021915];
neurogenesis [GO:0022008];
nuclear pore distribution [GO:0031081];
nuclear pore organization [GO:0006999];
paraxial mesoderm development [GO:0048339];
protein import into nucleus [GO:0006606];
protein sumoylation [GO:0016925];
regulation of cellular response to heat [GO:1900034];
regulation of glucose transport [GO:0010827];
regulation of transcription, DNA-templated [GO:0006355];
sister chromatid cohesion [GO:0007062];
somite development [GO:0061053];
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [GO:0000972];
tRNA export from nucleus [GO:0006409];
viral process [GO:0016032];
viral transcription [GO:0019083]
Gene Ontology
(Molecular Function)
Complete annatation
nucleocytoplasmic transporter activity [GO:0005487];
structural constituent of nuclear pore [GO:0017056]
Gene Ontology
(Cellular Component)
Complete annatation
condensed chromosome kinetochore [GO:0000777];
cytosol [GO:0005829];
membrane [GO:0016020];
nuclear envelope [GO:0005635];
nuclear membrane [GO:0031965];
nuclear pore [GO:0005643];
nuclear pore outer ring [GO:0031080]
Protein-protein interaction120864
Phylogenetic treeQ8WUM0
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD30.4691082168819650.1530757730065310.247151371264535
AZA vs. DISU0.08752642303145660.729992555909520.974560663114398
AZA vs. IL70.1259369698297150.5135279913678350.999311006273513
AZA vs. SAHA-0.07389416912852230.7623194875995130.936663943576638
DISU vs. CD3-0.3939977675123920.2772682848664730.406530699939423
DISU vs. IL70.02946359591771180.9069454849337820.982189124739072
DISU vs. SAHA-0.1604290031293330.5837294800499790.866300523861302
DMSO vs. AZA-0.04478478401447360.7899290386990161
DMSO vs. CD3-0.5258729472161630.1011007144708380.172469965293078
DMSO vs. DISU-0.1341799541951010.5833054022737390.933462080520893
DMSO vs. IL70.1779235881429930.3237860864718820.800221869993146
DMSO vs. SAHA-0.03575346662640390.8796454798250680.970649950684112
HIV vs. Mock in Activation-0.09273087605062790.88150232579710.999983755607037
HIV vs. Mock in Latency0.02081728708077870.9000027295577040.999834320637052
IL7 vs. CD3-0.3351372788038460.2969744607203030.434507478784422
SAHA vs. CD3-0.567996510169580.1099278341236440.188059082783894
SAHA vs. IL7-0.2036049557053270.4047268381581390.651035359982477
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) FALSE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK -0.0601219 0.750365
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
0.99 1.01 1.06 1.021 0.982
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

PDB Accession Method Resolution Chain Structure Preview
1XKS X-ray 2.3Å A=67-514.
3CQC X-ray 2.5Å B=935-1156.
3CQG X-ray 3.0Å B=934-1156.
3I4R X-ray 3.5Å B=517-1156.
5A9Q EM 23.0Å 3/C/L/U=1-1156.

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

HIV Partner Interaction Type PubMed
Envelope surface glycoprotein gp120 inhibited by 18597806
HIV-1 virus replication enhanced by expression of human gene 18187620

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
hsa03013 RNA transport - Homo sapiens (human)