Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0001923
UniProt IDO14561
Primary gene name(s)NDUFAB1
Synonym gene name(s)unknown
Protein nameAcyl carrier protein, mitochondrial
Protein functionCarrier of the growing fatty acid chain in fatty acid biosynthesis. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase, Complex I, which functions in the transfer of electrons from NADH to the respiratory chain. {ECO:0000269|PubMed:12611891}.
Subcellular locationMitochondrion {ECO:0000269|PubMed:12611891}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: O14561
Gene Ontology
(Biological Process)
Complete annatation
fatty acid biosynthetic process [GO:0006633];
glyoxylate metabolic process [GO:0046487];
mitochondrial electron transport, NADH to ubiquinone [GO:0006120];
mitochondrial respiratory chain complex I assembly [GO:0032981];
protein lipoylation [GO:0009249]
Gene Ontology
(Molecular Function)
Complete annatation
ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [GO:0000036];
calcium ion binding [GO:0005509];
fatty acid binding [GO:0005504];
NADH dehydrogenase, ubiquinone activity [GO:0008137]
Gene Ontology
(Cellular Component)
Complete annatation
mitochondrial inner membrane [GO:0005743];
mitochondrial matrix [GO:0005759];
mitochondrial membrane [GO:0031966];
mitochondrial respiratory chain complex I [GO:0005747]
Protein-protein interaction110786
Phylogenetic treeO14561
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD31.532190391552034.83140064988508e-063.20929354760105e-05
AZA vs. DISU-0.1471838381669320.5634661812628860.951925020821155
AZA vs. IL70.3517666704703170.07072796012736650.750234020408019
AZA vs. SAHA-0.2201625050007040.3713911976611730.738276528226891
DISU vs. CD3-1.691235034816055.62421874805707e-064.46442724635136e-05
DISU vs. IL70.4894798410657310.05386397072721990.306419243467979
DISU vs. SAHA-0.07129865049630820.8077069327443750.950232067413365
DMSO vs. AZA-0.1359099258399440.4262453341714841
DMSO vs. CD3-1.67518563474943.44929022566554e-072.69520525153793e-06
DMSO vs. DISU0.01067036314247160.9653688347686980.994294013509907
DMSO vs. IL70.4943600550144650.006743207272137620.171423017921542
DMSO vs. SAHA-0.09135497533856260.7010054845814750.910421238986537
HIV vs. Mock in Activation-0.1293770225880490.835606653896610.999983755607037
HIV vs. Mock in Latency-0.1132042623426850.5020887444793260.999834320637052
IL7 vs. CD3-1.173609352416510.0003130984880596040.00156580408444672
SAHA vs. CD3-1.776319210934351.0926745929174e-068.76754860790533e-06
SAHA vs. IL7-0.574099011829660.01967949929911860.0993132816990003
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) FALSE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK 0.339666 0.0270444
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
0.932 1.334 1.245 1.242 1.23
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

Drugbank ID Drug Name Drug Status Pharmacological Action Drug Action
DB00157 NADH nutraceutical unknown unknown

Protein Secondary Structure       (annotations from PDB)      top

PDB Accession Method Resolution Chain Structure Preview
2DNW NMR - A=71-156.

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
hsa00190 Oxidative phosphorylation - Homo sapiens (human)
hsa01100 Metabolic pathways - Homo sapiens (human)
hsa04932 Non-alcoholic fatty liver disease (NAFLD) - Homo sapiens (human)
hsa05010 Alzheimer's disease - Homo sapiens (human)
hsa05012 Parkinson's disease - Homo sapiens (human)
hsa05016 Huntington's disease - Homo sapiens (human)