Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0001921
UniProt IDQ9ULP0
Primary gene name(s)NDRG4
Synonym gene name(s)BDM1, KIAA1180
Protein nameProtein NDRG4
Protein functionContributes to the maintenance of intracerebral BDNF levels within the normal range, which is necessary for the preservation of spatial learning and the resistance to neuronal cell death caused by ischemic stress, By similarity. May enhance growth factor-induced ERK1 and ERK2 phosphorylation, including that induced by PDGF and FGF. May attenuate NGF-promoted ELK1 phosphorylation in a microtubule-dependent manner. {ECO:0000250, ECO:0000269|PubMed:12755708}.
Subcellular locationCytoplasm, cytosol {ECO:0000269|PubMed:12755708, ECO:0000269|PubMed:19592488}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q9ULP0
Gene Ontology
(Biological Process)
Complete annatation
brain development [GO:0007420];
cardiac muscle cell proliferation [GO:0060038];
cell differentiation [GO:0030154];
cell growth [GO:0016049];
cell migration involved in heart development [GO:0060973];
embryonic heart tube development [GO:0035050];
heart looping [GO:0001947];
negative regulation of platelet-derived growth factor receptor signaling pathway [GO:0010642];
negative regulation of smooth muscle cell migration [GO:0014912];
negative regulation of smooth muscle cell proliferation [GO:0048662];
positive regulation of ERK1 and ERK2 cascade [GO:0070374];
positive regulation of neuron projection development [GO:0010976];
regulation of endocytic recycling [GO:2001135];
response to stress [GO:0006950];
vesicle docking [GO:0048278];
visual learning [GO:0008542]
Gene Ontology
(Molecular Function)
Complete annatation
unknown
Gene Ontology
(Cellular Component)
Complete annatation
basolateral plasma membrane [GO:0016323];
cell projection membrane [GO:0031253];
cytoplasm [GO:0005737];
cytosol [GO:0005829];
endoplasmic reticulum membrane [GO:0005789];
mitochondrion [GO:0005739]
Protein-protein interaction122372
Phylogenetic treeQ9ULP0
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
      unknown
Brass et al., Science, 2008
      unknown
Smith et al., J. Immunol, 2010
      unknown
Interferon-stimulated
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model


DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD31.327590097892540.002475834481182050.00797857115680476
AZA vs. DISU0.3011234302379070.3127547958063090.868081173655893
AZA vs. IL70.02191738135868580.9321344886910620.999311006273513
AZA vs. SAHA0.9907011978047320.0005569831139780050.0138091504278034
DISU vs. CD3-1.044644569062840.01510981564354120.0408841071640172
DISU vs. IL7-0.2886621192748510.3258326988434470.706244131569368
DISU vs. SAHA0.6952289883589820.03064576350104740.209651521436353
DMSO vs. AZA0.08662466815309760.7186398825174481
DMSO vs. CD3-1.254403540538020.003122454790442820.00921445277532244
DMSO vs. DISU-0.2154795050040990.4504438618261080.888470621945532
DMSO vs. IL7-0.05709547461039370.812562201568030.962538241700332
DMSO vs. SAHA0.9008623221895780.001009403415202730.0179607070490204
HIV vs. Mock in Activation0.6571264610622530.376146238422990.999983755607037
HIV vs. Mock in Latency0.01960160348424590.9226673556171220.999834320637052
IL7 vs. CD3-1.309143721649910.002409498275472650.00902768270101897
SAHA vs. CD3-0.3620404677887710.3851818363786340.501753133835114
SAHA vs. IL70.9720232317520880.0005841165376783140.00779812327069789
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) TRUE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
NOTEST 0.373708 1
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
unknown unknown unknown unknown unknown
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

not found

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
not found
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