Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0001150
UniProt IDQ8WTR4
Primary gene name(s)GDPD5
Synonym gene name(s)GDE2
Protein nameGlycerophosphodiester phosphodiesterase domain-containing protein 5
Protein functionPromotes neurite formation. Cooperates with PRDX1 to drive postmitotic motor neuron differentiation. The glycerophosphodiester phosphodiesterase activity may be required for its role in neuronal differentiation. May contribute to the osmotic regulation of cellular glycerophosphocholine.
Subcellular locationEndomembrane system {ECO:0000250|UniProtKB:Q640M6};
Multi-pass membrane protein {ECO:0000255}. Cytoplasm, perinuclear region {ECO:0000250|UniProtKB:Q640M6}. Cell projection, growth cone {ECO:0000250|UniProtKB:Q640M6}. Note=In a punctate perinuclear pattern. {ECO:0000250|UniProtKB:Q640M6}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q8WTR4
Gene Ontology
(Biological Process)
Complete annatation
cerebral cortex neuron differentiation [GO:0021895];
lipid metabolic process [GO:0006629];
negative regulation of Notch signaling pathway [GO:0045746];
neuron projection development [GO:0031175];
positive regulation of cell cycle [GO:0045787];
positive regulation of neuron differentiation [GO:0045666];
regulation of timing of cell differentiation [GO:0048505];
spinal cord motor neuron differentiation [GO:0021522]
Gene Ontology
(Molecular Function)
Complete annatation
glycerophosphocholine phosphodiesterase activity [GO:0047389];
glycerophosphodiester phosphodiesterase activity [GO:0008889]
Gene Ontology
(Cellular Component)
Complete annatation
axon [GO:0030424];
growth cone [GO:0030426];
integral component of membrane [GO:0016021];
neuronal cell body [GO:0043025];
perinuclear endoplasmic reticulum [GO:0097038]
Protein-protein interaction123512
Phylogenetic treeQ8WTR4
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD3-2.547143722484354.44449964609461e-084.61729790681057e-07
AZA vs. DISU0.01776490601110320.9445468059991050.996198528027442
AZA vs. IL7-0.3602403858703630.1698957642949120.941150532286992
AZA vs. SAHA0.1022609832352150.6766316496878250.905499421821224
DISU vs. CD32.552998099586885.36346237423047e-087.04258116978659e-07
DISU vs. IL7-0.387884898006520.1561549532972110.512369849016615
DISU vs. SAHA0.08782600797081190.7636519964418780.933550421541992
DMSO vs. AZA0.07415104205458810.7005720766188181
DMSO vs. CD32.610407521302153.41509465151546e-094.00688480724925e-08
DMSO vs. DISU0.05489052616631530.8226802826832420.980295078677667
DMSO vs. IL7-0.4269327820215730.04968864007431810.440025453657364
DMSO vs. SAHA0.02363248398344160.9204984753797310.981674635498209
HIV vs. Mock in Activation0.2983473456522440.748985875579080.999983755607037
HIV vs. Mock in Latency0.457702452177180.06108341535970030.96664934224592
IL7 vs. CD32.191397663381322.75389147608163e-062.4217856603838e-05
SAHA vs. CD32.627162767927521.69569529528957e-082.14560269521526e-07
SAHA vs. IL70.460551518835250.08058368184945140.252068566133769
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) TRUE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK -0.317499 0.0655076
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
unknown unknown unknown unknown unknown
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

not found

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
not found