Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0000918
UniProt IDP20042
Primary gene name(s)EIF2S2
Synonym gene name(s)EIF2B
Protein nameEukaryotic translation initiation factor 2 subunit 2
Protein functioneIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.
Subcellular locationunknown
ECO codeClick here for more information.
Amino acid sequence
FASTA format: P20042
Gene Ontology
(Biological Process)
Complete annatation
in utero embryonic development [GO:0001701];
male germ cell proliferation [GO:0002176];
male gonad development [GO:0008584];
translational initiation [GO:0006413];
transmembrane transport [GO:0055085]
Gene Ontology
(Molecular Function)
Complete annatation
metal ion binding [GO:0046872];
poly(A RNA binding [GO:0044822];
RNA binding [GO:0003723];
translation factor activity, RNA binding [GO:0008135];
translation initiation factor activity [GO:0003743]
Gene Ontology
(Cellular Component)
Complete annatation
cytoplasm [GO:0005737];
cytosol [GO:0005829];
eukaryotic translation initiation factor 2 complex [GO:0005850]
Protein-protein interaction114411
Phylogenetic treeP20042
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
      unknown
Brass et al., Science, 2008
      unknown
Smith et al., J. Immunol, 2010
      unknown
Interferon-stimulated
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model


DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD31.24920301095970.0001670487018944340.00075699279463407
AZA vs. DISU-0.1609857596572120.5242044405908750.94090051481386
AZA vs. IL70.2972468218625990.121957680152510.887008372670129
AZA vs. SAHA-0.1891705471021050.4378607636622920.78642524386094
DISU vs. CD3-1.423144256468010.0001142762043671030.0006384727593142
DISU vs. IL70.4493654088056310.0746768995775930.362956415628348
DISU vs. SAHA-0.02685205546168230.9265036405547990.982912316194879
DMSO vs. AZA-0.0326941025455830.8451720152420531
DMSO vs. CD3-1.292882032215836.74567746833388e-050.000317019730583478
DMSO vs. DISU0.1267143102769920.6032463251974010.939289650701039
DMSO vs. IL70.3370454484211980.06084708733798860.474842065612334
DMSO vs. SAHA-0.1632330450707240.4884422341041130.807855420913577
HIV vs. Mock in Activation-0.2697619074936220.6643420188807950.999983755607037
HIV vs. Mock in Latency-0.1220214711546680.4595256312241050.999834320637052
IL7 vs. CD3-0.9438061840910210.003524580623929350.0124826136617686
SAHA vs. CD3-1.462971884245154.82016241251104e-050.000251959235367816
SAHA vs. IL7-0.4897743140519920.04455836785779970.170188182259422
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) FALSE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK 0.161295 0.279548
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
0.98 1.026 1.003 0.943 0.912
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

not found

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

HIV Partner Interaction Type PubMed
Rev interacts with 22174317
Tat competes with 9079663
10620360
Tat interacts with 10648795

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
hsa03013 RNA transport - Homo sapiens (human)
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