Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0000837
UniProt IDQ9UBS3
Primary gene name(s)DNAJB9
Synonym gene name(s)MDG1
Protein nameDnaJ homolog subfamily B member 9
Protein functionInvolved in endoplasmic reticulum-associated degradation, ERAD of misfolded proteins. Acts as a co-chaperone with an Hsp70 protein. {ECO:0000269|PubMed:18400946}.
Subcellular locationEndoplasmic reticulum lumen {ECO:0000250}.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q9UBS3
Gene Ontology
(Biological Process)
Complete annatation
ER-associated ubiquitin-dependent protein catabolic process [GO:0030433];
IRE1-mediated unfolded protein response [GO:0036498]
Gene Ontology
(Molecular Function)
Complete annatation
misfolded protein binding [GO:0051787]
Gene Ontology
(Cellular Component)
Complete annatation
cytoplasm [GO:0005737];
endoplasmic reticulum [GO:0005783];
endoplasmic reticulum lumen [GO:0005788];
endoplasmic reticulum membrane [GO:0005789];
extracellular exosome [GO:0070062];
nucleolus [GO:0005730]
Protein-protein interaction110354
Phylogenetic treeQ9UBS3
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
Brass et al., Science, 2008
Smith et al., J. Immunol, 2010
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model

DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD3-0.2281585387084870.4860465186464650.604031425547454
AZA vs. DISU0.4197448000869370.4315778216130330.915650781529304
AZA vs. IL7-0.1084155903772880.5744115103230860.999311006273513
AZA vs. SAHA-0.4899799493081320.04590249259794010.256839199796044
DISU vs. CD30.6362631610734110.2249127673668790.348423087471454
DISU vs. IL7-0.5369830582631410.3166753363682360.699322340876978
DISU vs. SAHA-0.9095056941438270.09903963600244610.402650756458825
DMSO vs. AZA-0.186803759274140.2667950905562211
DMSO vs. CD30.03058176916666960.9237921663408450.947503335098368
DMSO vs. DISU-0.6082170480280790.2493359986494440.768264426263062
DMSO vs. IL70.08560987507389760.635168015670190.920865342972506
DMSO vs. SAHA-0.310569593326260.1907429897812790.526269513015184
HIV vs. Mock in Activation-0.1786264777224090.7743435231412560.999983755607037
HIV vs. Mock in Latency-0.02540379016090420.8776814161800760.999834320637052
IL7 vs. CD30.1284266814012660.6895449402528270.788821408958019
SAHA vs. CD3-0.2869255550576050.4184651461339730.533038745732957
SAHA vs. IL7-0.3854064783406430.1173942976963450.316452368289468
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) TRUE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK 0.176385 0.250665
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
unknown unknown unknown unknown unknown
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
202842_s_at 1.49 No downregulated in CD8+ cells
202843_at 1.66 No downregulated in CD8+ cells

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

PDB Accession Method Resolution Chain Structure Preview
2CTR NMR - A=26-100.

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
not found