Detailed entry information

Protein Information (annotations from UniProt)

Database IDHIV0000607
UniProt IDQ8WVB6
Primary gene name(s)CHTF18
Synonym gene name(s)C16orf41, CTF18
Protein nameChromosome transmission fidelity protein 18 homolog
Protein functionChromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C, CTF18-RFC, which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single-stranded and primed DNAs and has weak ATPase activity that is stimulated by the presence of primed DNA, replication protein A, RPA and by proliferating cell nuclear antigen, PCNA. The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates DNA polymerase POLH. {ECO:0000269|PubMed:12766176, ECO:0000269|PubMed:12930902, ECO:0000269|PubMed:17545166}.
Subcellular locationNucleus {ECO:0000269|PubMed:12766176}. Note=Associates with chromatin during S phase.
ECO codeClick here for more information.
Amino acid sequence
FASTA format: Q8WVB6
Gene Ontology
(Biological Process)
Complete annatation
cell cycle [GO:0007049];
DNA replication [GO:0006260];
positive regulation of DNA-directed DNA polymerase activity [GO:1900264]
Gene Ontology
(Molecular Function)
Complete annatation
ATP binding [GO:0005524];
DNA binding [GO:0003677]
Gene Ontology
(Cellular Component)
Complete annatation
Ctf18 RFC-like complex [GO:0031390];
cytoplasm [GO:0005737];
membrane [GO:0016020];
nucleoplasm [GO:0005654]
Protein-protein interaction121991
Phylogenetic treeQ8WVB6
HIV replication factor status Zhou et al., Cell. Host. Microbe., 2008
      unknown
Brass et al., Science, 2008
      unknown
Smith et al., J. Immunol, 2010
      unknown
Interferon-stimulated
gene status
Lu et al., J. Virol., 2011
      Folds changes 8h: unknown; Folds changes 16h: unknown; Tested: unknown;
Schoggins JW and Rice CM, Curr. Opin. Virol., 2011
      Targeted viruses: unknown
      Viral life cycle: unknown
      Mechanism related to antiviral activity: unknown
Anti-viral restriction factor Liu et al., Retrovirology, 2011
      unknown (Triplicates)

Gene Expression Profile       top

            Up-regulated;            Down-regulated

For brief introduction to each study, please go to the help page.

Gene expression during HIV latency

(1). Mohammadi et al., PLoS Pathog., 2014

Differentially expressed transcripts (Pairwise) during latency and subsequent viral reactivation using several agents - Primary CD4+ T-cell based model


DMSO: Dimethyl suloxyde (negative control) - 0.0033% final
SAHA: Vorinostat (Histone deacetylase inhibitor) - 0.5 μM
CD3: TCR Stimulation by IL-2+ antiCD3/anti-CD28 antibodies
IL7: Interleukin-7 based stimulation
DISU: Disulfiram (alcohol dehydrogenase inhibitor) - 0.5 μM
AZA: 5-azacytidine (AZA; DNA methylation inhibitor) - 1 μM
Experimental Condition Log2 Fold Change P value Adjusted P value
AZA vs. CD30.8099102516952250.1913968211818240.294841873349596
AZA vs. DISU0.3756875367894960.1736628532559020.759673555198704
AZA vs. IL70.003834546558856170.9878581611495120.999311006273513
AZA vs. SAHA-0.4124251258110630.09571591350267530.390902649726179
DISU vs. CD3-0.4477869351750090.4681013963460840.596407984734859
DISU vs. IL7-0.3815945141720370.2198567475918560.601911527781215
DISU vs. SAHA-0.7851177823964560.008344094575108320.0912582360968487
DMSO vs. AZA0.0557663403734590.745181389554341
DMSO vs. CD3-0.766293775926010.2082877834189420.30908024382466
DMSO vs. DISU-0.3219668535407890.1957320118725190.713270904924328
DMSO vs. IL7-0.04422513933180280.8417043192158860.965066368434703
DMSO vs. SAHA-0.4727270619902360.04807273443296470.2472710514127
HIV vs. Mock in Activation0.6294224650566480.6241586034122110.999983755607037
HIV vs. Mock in Latency0.1004370857488660.5549763324441510.999834320637052
IL7 vs. CD3-0.802248894621740.1957433326247360.317353904770641
SAHA vs. CD3-1.24565545323530.04517055223138120.0912249024560326
SAHA vs. IL7-0.4187067204841180.09141166674412080.272751279592414
(2). Iglesias-Ussel et al., J. Virol., 2013

Up and Downregulated transcripts during Latency (Latently infected CD4+ T cells vs Uninfected)- Primary CD4+Tcell based model
Log2 Fold Change P Value
unknown unknown

Gene expression during HIV infection and replication

(1). Imbeault et al., PloS Pathog., 2012

Transcriptomic profiling of HIV-1 infected CD4+ T cells - Primary CD4+ T cells
Experiment type Log2 Fold Change P Value Adjusted P Value
Infected vs. Mock unknown unknown unknown
Infected vs. Bystander unknown unknown unknown
(2). Lefebvre et al., J. Virol., 2011

Transcriptome analysis of T-cell line (Sup T1)
Log2 Fold Change unknown
(3). Li et al., J. Immunol., 2013

Lymphatic tissue
Acute Fold Change Acute P Value Asymt Fold Change Asypt P Value AIDS Fold Change AIDS P Value
unknown unknown unknown unknown unknown unknown
(4). Chang et al., MBio., 2011

Transcriptome analysis of T-cell line (Sup T1)

Derived from Sherrill-Mix et al., BMC Retrovirol., 2015 cross validation
Up-regulated (True) TRUE
(5). Sherrill-Mix et al., BMC Retrovirol., 2015

Deep RNA-seq analysis of primary human T cell infected with low passage HIV isolate HIV89.6 - Primary CD4+ T cell based
Test Status Log2 Fold Change P Value
OK 0.873505 0.000305467
(6). Rotger et al., PLoS Pathog., 2010

Genome-wide mRNA expression of CD4+ T cells from HIV-infected patient
(Genes differentially expressed (at adjusted p<0.01) according to the empirical Bayes approach)
Log2 Fold Change P Value
unknown unknown

Proteomic/Transcriptomics studies indicating differentially expressed genes mediated by HIV

(1). Greenwood et al., Elife, 2016

Activated (CD3/CD28) Primary human CD4+ T cells infected with pNL4-3-dE-EGFP. The table shows the complete (unfiltered) TMT (tandem mass tag)-based proteomic time course dataset
6 h 24 h 48 h 72 h RTi
0.988 0.964 0.943 0.939 0.906
(2). Navare et al., Virology, 2012

SUP-T1 cell line
FC-4hpi P-value FC-8hpi P-value FC-20hpi P-value Category
unknown unknown unknown unknown unknown unknown unknown
(3). Hyrcza et al., J. Virolo., 2007

Primary human CD4+ and CD8+ T Cells
Affymetrix Prob ID Fold Change In CD8? Category
unknown unknown unknown unknown

Protein Overview       top

Drug-protein Interaction       (annotations from DrugBank)      top

not found

Protein Secondary Structure       (annotations from PDB)      top

not found

HIV-1 Interaction       (annotations from NCBI HIV-1 Interaction Database)      top

not found

Metabolic/Signalling Pathway       (annotations from KEGG database)      top

Pathway Accession Number Description
not found
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